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a fast splice junction mapper for RNA-Seq readsTopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.
Version: 2.1.2 License: Boost-1
GitHub
| Maintainers | MarcusCalhoun-Lopez |
| Categories | science biology |
| Homepage | https://ccb.jhu.edu/software/tophat/ |
| Platforms | darwin |
| Variants |
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"tophat" depends on
lib (5)
run (3)
build (4)
Ports that depend on "tophat"
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Port notes
By default, TopHat uses BowTie version 2, so the port bowtie2 was installed as a dependency.
To use BowTie version 1 as well, please install the port bowtie manually.
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