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a fast splice junction mapper for RNA-Seq reads

TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.

Version: 2.1.2 License: Boost-1 GitHub
Maintainers MarcusCalhoun-Lopez
Categories science biology
Homepage https://ccb.jhu.edu/software/tophat/
Platforms darwin
Variants
  • universal (Build for multiple architectures)

"tophat" depends on

lib (5)
run (3)
build (4)

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Port notes

By default, TopHat uses BowTie version 2, so the port bowtie2 was installed as a dependency.
To use BowTie version 1 as well, please install the port bowtie manually.


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