Bayesian co-estimation of phylogenies and multiple alignments via MCMC
BAli-Phy estimates multiple sequence alignments and evolutionary trees from DNA, amino acid, or codon sequences. It uses likelihood-based evolutionary models of substitutions and insertions and deletions to place gaps.
BAli-Phy estimates multiple sequence alignments and evolutionary trees from DNA, amino acid, or codon sequences. It uses likelihood-based evolutionary models of substitutions and insertions and deletions to place gaps.
To install bali-phy, run the following command in macOS terminal (Applications->Utilities->Terminal)
sudo port install bali-phy
To see what files were installed by bali-phy, run:
port contents bali-phy
To later upgrade bali-phy, run:
sudo port selfupdate && sudo port upgrade bali-phy
Reporting an issue on MacPorts Trac
The MacPorts Project uses a system called Trac to file tickets to report bugs and enhancement requests.
Though anyone may search Trac for tickets, you must have a GitHub account in order to login to Trac to create tickets.