TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.
TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.
To install tophat, run the following command in macOS terminal (Applications->Utilities->Terminal)
sudo port install tophat
To see what files were installed by tophat, run:
port contents tophat
To later upgrade tophat, run:
sudo port selfupdate && sudo port upgrade tophat
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