tophat

v 2.1.2

a fast splice junction mapper for RNA-Seq reads

TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.

https://ccb.jhu.edu/software/tophat/

To install tophat, paste this in macOS terminal after installing MacPorts

sudo port install tophat

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