Maintainers	reneeotten
Categories	science
Homepage	https://theobald.brandeis.edu/theseus
Platforms	darwin
Variants	mafft (Use MAFFT for multiple sequence alignment) muscle (Use MUSCLE for multiple sequence alignment) universal (Build for multiple architectures)

"theseus" depends on

lib (1)

run (1)

build (2)

Ports that depend on "theseus"

No ports

Port notes

The provided wrapper script 'theseus_align', runs THESEUS on multiple PDB files. This script transparently extracts the proper sequences from the PDB files, aligns them, and then performs the ML superposition based on that alignment.

It can use different alignment programs: MUSCLE and MAFFT are currently present in MacPorts; others (PROBCONS, CLUSTALW, CLUSTAL-OMEGA, T_COFFEE, KALIGN, DIALIGN2) can be utilized as well, but will require editing of the script located in: ${prefix}/bin/theseus_align ** MUSCLE will be used as alignment program by 'theseus_align' **