SAM (Sequence Alignment/Map) Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
SAM (Sequence Alignment/Map) Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
To install samtools, run the following command in macOS terminal (Applications->Utilities->Terminal)
sudo port install samtools
To see what files were installed by samtools, run:
port contents samtools
To later upgrade samtools, run:
sudo port selfupdate && sudo port upgrade samtools
Reporting an issue on MacPorts Trac
The MacPorts Project uses a system called Trac to file tickets to report bugs and enhancement requests.
Though anyone may search Trac for tickets, you must have a GitHub account in order to login to Trac to create tickets.