program for aligning and scoring two profile hidden Markov models
PRC is a stand-alone program for aligning and scoring two profile hidden Markov models. This can be used to detect remote relationships between profiles more effectively than by doing simple profile-sequence comparisons. PRC takes into account all transition and emission probabilities in both hidden Markov models. PRC can read SAM, HMMER, PSI-BLAST and FASTA files.
PRC is a stand-alone program for aligning and scoring two profile hidden Markov models. This can be used to detect remote relationships between profiles more effectively than by doing simple profile-sequence comparisons. PRC takes into account all transition and emission probabilities in both hidden Markov models. PRC can read SAM, HMMER, PSI-BLAST and FASTA files.
To install prc, run the following command in macOS terminal (Applications->Utilities->Terminal)
sudo port install prc
To see what files were installed by prc, run:
port contents prc
To later upgrade prc, run:
sudo port selfupdate && sudo port upgrade prc
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