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an ultrafast, memory-efficient short read aligner

Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end).

Version: 1.2.3 License: Artistic-1 and LGPL-3+ GitHub
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29 build(s) found
Builder Build Number Start Time Elapsed Time Watcher Build Status
12 31742 2022-06-04 7:46:57 0:03:15 8412 failed install-port
10.7 101830 2022-06-04 4:54:24 0:01:23 31389 failed install-port
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10.7 86699 2022-01-24 0:12:12 0:00:57 26992 failed install-port
11 62215 2022-01-24 0:00:00 0:03:02 15232 failed install-port
12 10965 2022-01-06 6:58:52 0:02:15 3073 failed install-port
10.7 63090 2021-07-19 11:58:54 0:01:28 20050 failed install-port
11 40647 2021-07-19 9:13:35 0:03:25 8035 failed install-port
11 26400 2021-04-10 13:23:45 0:03:16 4595 failed install-port
10.7 49376 2021-04-09 20:08:09 0:01:35 16621 failed install-port
11 21374 2021-02-10 12:15:49 0:03:21 2889 failed install-port
10.7 44278 2021-02-10 10:02:18 0:01:51 14890 failed install-port
10.7 16959 2020-02-03 3:46:30 0:01:32 3941 failed install-port
10.15 10653 2019-12-08 9:20:21 0:03:07 1263 build successful
10.6.x86_64 8386 2019-11-15 22:06:35 0:12:28 1826 build successful
10.8 7553 2019-11-14 14:25:44 0:02:59 1824 build successful
10.7 8618 2019-11-13 10:57:16 0:01:36 1824 failed install-port
10.10 92012 2019-08-10 14:17:18 0:03:33 26626 build successful
10.12 96314 2019-08-10 14:17:08 0:04:02 25566 build successful
10.14 35886 2019-08-10 14:16:49 0:03:41 8261 build successful
10.13 61663 2019-08-10 14:16:40 0:03:21 17546 build successful
10.11 91499 2019-08-10 14:16:22 0:03:04 26582 build successful
10.9 94176 2019-08-10 14:16:04 0:02:52 26571 build successful
10.5_ppc 94095 2019-02-26 10:41:56 0:00:27 21757 failed install-dependencies
10.5_ppc 91758 2019-01-28 2:51:28 0:00:28 20921 failed install-dependencies
10.5_ppc 91757 2019-01-28 2:40:07 0:00:28 20920 failed install-dependencies
10.13 48620 2019-01-28 2:32:56 0:03:32 12610 build successful
10.12 83472 2019-01-28 2:28:47 0:04:11 20634 build successful
10.5_ppc 91099 2019-01-19 15:12:48 0:00:30 20745 failed install-dependencies