GET /api/v1/ports/tophat/
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{
"name": "tophat",
"portdir": "science/tophat",
"version": "2.1.2",
"license": "Boost-1",
"platforms": "darwin",
"epoch": 0,
"replaced_by": null,
"homepage": "https://ccb.jhu.edu/software/tophat/",
"description": "a fast splice junction mapper for RNA-Seq reads",
"long_description": "TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.",
"active": true,
"categories": [
"science",
"biology"
],
"maintainers": [
{
"name": "mcalhoun",
"github": "MarcusCalhoun-Lopez",
"ports_count": 1413
}
],
"variants": [
"universal"
],
"dependencies": [
{
"type": "build",
"ports": [
"clang-17",
"libtool",
"automake",
"autoconf"
]
},
{
"type": "lib",
"ports": [
"boost176",
"zlib",
"python27",
"samtools-0.1",
"seqan-1"
]
},
{
"type": "run",
"ports": [
"bowtie2",
"py27-sortedcontainers",
"py27-intervaltree2"
]
}
],
"depends_on": []
}