{"name":"tophat","portdir":"science/tophat","version":"2.1.2","license":"Boost-1","platforms":"darwin","epoch":0,"replaced_by":null,"homepage":"https://ccb.jhu.edu/software/tophat/","description":"a fast splice junction mapper for RNA-Seq reads","long_description":"TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.","active":true,"categories":["science","biology"],"maintainers":[{"name":"mcalhoun","github":"MarcusCalhoun-Lopez","ports_count":1594}],"variants":["universal"],"dependencies":[{"type":"build","ports":["clang-17","libtool","automake","autoconf"]},{"type":"lib","ports":["boost176","zlib","python27","samtools-0.1","seqan-1"]},{"type":"run","ports":["bowtie2","py27-sortedcontainers","py27-intervaltree2"]}],"depends_on":[]}