{"name":"cufflinks","portdir":"science/cufflinks","version":"2.2.1","license":"Boost-1","platforms":"darwin","epoch":0,"replaced_by":null,"homepage":"http://cole-trapnell-lab.github.io/cufflinks/","description":"Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples.","long_description":"Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one.","active":true,"categories":["science","biology"],"maintainers":[{"name":"ryandesign","github":"ryandesign","ports_count":2085}],"variants":["universal"],"dependencies":[{"type":"build","ports":["samtools","clang-18"]},{"type":"lib","ports":["zlib","eigen3","htslib","boost171"]}],"depends_on":[]}