HTTP 200 OK
Allow: GET, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept
{
"count": 50429,
"next": "https://ports.macports.org/api/v1/ports/?format=api&ordering=-updated_at&page=657",
"previous": "https://ports.macports.org/api/v1/ports/?format=api&ordering=-updated_at&page=655",
"results": [
{
"name": "R-bayest",
"portdir": "R/R-bayest",
"version": "1.5",
"license": "GPL-3",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://cran.r-project.org/package=bayest",
"description": "Effect size targeted Bayesian two-sample t-tests via Markov chain Monte Carlo in Gaussian mixture models",
"long_description": "Provides an Markov-Chain-Monte-Carlo algorithm for Bayesian t-tests on the effect size. The underlying Gibbs sampler is based on a two-component Gaussian mixture and approximates the posterior distributions of the effect size, the difference of means and difference of standard deviations. A posterior analysis of the effect size via the region of practical equivalence is provided as well.",
"active": true,
"categories": [
"science",
"math",
"R"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"R",
"clang-16"
]
},
{
"type": "lib",
"ports": [
"R-MCMCpack",
"R-CRAN-recommended"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-coda"
]
}
],
"depends_on": []
},
{
"name": "R-bayess",
"portdir": "R/R-bayess",
"version": "1.6",
"license": "GPL-2+",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://github.com/jmm34/bayess",
"description": "Bayesian Essentials with R",
"long_description": "Bayesian Essentials with R",
"active": true,
"categories": [
"science",
"math",
"R"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"clang-16",
"R"
]
},
{
"type": "lib",
"ports": [
"R-gplots",
"R-mnormt",
"R-CRAN-recommended",
"R-combinat"
]
},
{
"type": "run",
"ports": [
"R"
]
}
],
"depends_on": []
},
{
"name": "R-bayespm",
"portdir": "R/R-bayespm",
"version": "0.2.0",
"license": "GPL-2+",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://cran.r-project.org/package=bayespm",
"description": "Bayesian Statistical Process Monitoring",
"long_description": "Bayesian Statistical Process Monitoring",
"active": true,
"categories": [
"science",
"math",
"R"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"clang-16",
"R"
]
},
{
"type": "lib",
"ports": [
"R-gridExtra",
"R-extraDistr",
"R-invgamma",
"R-CRAN-recommended",
"R-rmutil",
"R-ggplot2"
]
},
{
"type": "run",
"ports": [
"R"
]
}
],
"depends_on": []
},
{
"name": "R-bayesplot",
"portdir": "R/R-bayesplot",
"version": "1.11.1",
"license": "GPL-3+",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://mc-stan.org/bayesplot",
"description": "Plotting for Bayesian Models",
"long_description": "Plotting for Bayesian Models",
"active": true,
"categories": [
"graphics",
"science",
"math",
"R"
],
"maintainers": [
{
"name": "vital.had",
"github": "barracuda156",
"ports_count": 2571
}
],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"clang-16",
"R"
]
},
{
"type": "lib",
"ports": [
"R-reshape2",
"R-tidyselect",
"R-ggplot2",
"R-ggridges",
"R-posterior",
"R-CRAN-recommended",
"R-rlang",
"R-dplyr",
"R-tibble",
"R-glue"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-ggfortify",
"R-hexbin",
"R-rstantools",
"R-loo",
"R-RColorBrewer",
"R-gridExtra",
"R-knitr",
"R-rstan",
"R-scales",
"R-testthat",
"R-rmarkdown",
"R-rstanarm",
"R-shinystan",
"R-vdiffr"
]
}
],
"depends_on": [
{
"type": "lib",
"ports": [
"R-bvhar",
"R-mcp",
"R-revdbayes",
"R-bssm",
"R-bang",
"R-mvgam",
"R-BayesMultiMode",
"R-shinystan",
"R-blavaan",
"R-baggr",
"R-bayesGAM",
"R-bayesforecast",
"R-RBesT",
"R-lgpr",
"R-rstanarm",
"R-brms",
"R-FlexReg",
"R-multilevelcoda",
"R-walker",
"R-multinma",
"R-MixSIAR",
"R-bayesvl"
]
},
{
"type": "test",
"ports": [
"R-geostan",
"R-pompp",
"R-projpred",
"R-cmdstanr",
"R-performance",
"R-bayesPO",
"R-iwmm",
"R-priorsense",
"R-countSTAR",
"R-tidybayes",
"R-Ecfun",
"R-bsitar",
"R-rmsb",
"R-CausalQueries",
"R-rstan",
"R-loo",
"R-emmeans",
"R-mcmcsae",
"R-bayestestR"
]
}
]
},
{
"name": "R-bayesplay",
"portdir": "R/R-bayesplay",
"version": "0.9.3",
"license": "MIT",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://bayesplay.github.io/bayesplay",
"description": "Bayes factor playground",
"long_description": "Bayes factor playground",
"active": true,
"categories": [
"science",
"math",
"R"
],
"maintainers": [
{
"name": "vital.had",
"github": "barracuda156",
"ports_count": 2571
}
],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"clang-16",
"R"
]
},
{
"type": "lib",
"ports": [
"R-CRAN-recommended",
"R-gginnards"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-rmarkdown",
"R-covr",
"R-vdiffr",
"R-patrick",
"R-ggplot2",
"R-knitr",
"R-testthat",
"R-markdown"
]
}
],
"depends_on": []
},
{
"name": "R-bayesmlogit",
"portdir": "R/R-bayesmlogit",
"version": "1.0.1",
"license": "GPL-3+",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://cran.r-project.org/package=bayesmlogit",
"description": "Multistate Life Table (MSLT) methodology based on Bayesian approach",
"long_description": "Create life tables with a Bayesian approach, which can be very useful for modelling a complex health process when considering multiple predisposing factors and multiple coexisting health conditions.",
"active": true,
"categories": [
"science",
"R"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"clang-16",
"R"
]
},
{
"type": "lib",
"ports": [
"R-dplyr",
"R-ggplot2",
"R-CRAN-recommended",
"R-magrittr"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-knitr",
"R-rmarkdown"
]
}
],
"depends_on": []
},
{
"name": "R-bayesmix",
"portdir": "R/R-bayesmix",
"version": "0.7-6",
"license": "(GPL-2 or GPL-3)",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://statmath.wu.ac.at/~gruen/BayesMix",
"description": "Bayesian Mixture models with JAGS",
"long_description": "Bayesian Mixture models with JAGS",
"active": true,
"categories": [
"science",
"math",
"R"
],
"maintainers": [
{
"name": "vital.had",
"github": "barracuda156",
"ports_count": 2571
}
],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"R",
"clang-16"
]
},
{
"type": "lib",
"ports": [
"R-coda",
"R-rjags",
"R-CRAN-recommended"
]
},
{
"type": "run",
"ports": [
"R"
]
}
],
"depends_on": []
},
{
"name": "R-bayesmeta",
"portdir": "R/R-bayesmeta",
"version": "3.4",
"license": "GPL-2+",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://gitlab.gwdg.de/croever/bayesmeta",
"description": "Bayesian random-effects meta-analysis and meta-regression",
"long_description": "Bayesian random-effects meta-analysis and meta-regression",
"active": true,
"categories": [
"science",
"math",
"R"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"clang-16",
"R"
]
},
{
"type": "lib",
"ports": [
"R-forestplot",
"R-metafor",
"R-CRAN-recommended",
"R-mvtnorm",
"R-numDeriv"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-knitr",
"R-rmarkdown",
"R-R.rsp",
"R-compute.es"
]
}
],
"depends_on": [
{
"type": "lib",
"ports": [
"R-ra4bayesmeta"
]
}
]
},
{
"name": "R-bayeslincom",
"portdir": "R/R-bayeslincom",
"version": "1.3.0",
"license": "GPL-2",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://cran.r-project.org/package=bayeslincom",
"description": "Linear combinations of Bayesian posterior samples",
"long_description": "Linear combinations of Bayesian posterior samples",
"active": true,
"categories": [
"science",
"math",
"R"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"R",
"clang-16"
]
},
{
"type": "lib",
"ports": [
"R-ggplot2",
"R-CRAN-recommended"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-BGGM",
"R-testthat"
]
}
],
"depends_on": [
{
"type": "lib",
"ports": [
"R-BBcor"
]
}
]
},
{
"name": "R-bayesanova",
"portdir": "R/R-bayesanova",
"version": "1.6",
"license": "GPL-2",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://cran.r-project.org/package=bayesanova",
"description": "Bayesian inference in the Analysis of Variance via Markov Chain Monte Carlo in gaussian mixture models",
"long_description": "Bayesian inference in the Analysis of Variance via Markov Chain Monte Carlo in gaussian mixture models",
"active": true,
"categories": [
"science",
"math",
"R"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"R",
"clang-16"
]
},
{
"type": "lib",
"ports": [
"R-MCMCpack",
"R-CRAN-recommended"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-knitr",
"R-coda"
]
}
],
"depends_on": []
},
{
"name": "R-bayesROE",
"portdir": "R/R-bayesROE",
"version": "0.2",
"license": "GPL-3+",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://github.com/waidschrat/bayesROE",
"description": "Bayesian Regions of Evidence",
"long_description": "Bayesian Regions of Evidence",
"active": true,
"categories": [
"science",
"math",
"R"
],
"maintainers": [
{
"name": "vital.had",
"github": "barracuda156",
"ports_count": 2571
}
],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"clang-16",
"R"
]
},
{
"type": "lib",
"ports": [
"R-shiny",
"R-colourpicker",
"R-config",
"R-shinyBS",
"R-golem",
"R-CRAN-recommended",
"R-ggplot2",
"R-scales"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-testthat",
"R-spelling"
]
}
],
"depends_on": []
},
{
"name": "R-bayefdr",
"portdir": "R/R-bayefdr",
"version": "0.2.1",
"license": "GPL-3",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://cran.r-project.org/package=bayefdr",
"description": "Bayesian estimation and optimisation of expected FDR and expected FNR",
"long_description": "Bayesian estimation and optimisation of expected FDR and expected FNR",
"active": true,
"categories": [
"science",
"R"
],
"maintainers": [
{
"name": "vital.had",
"github": "barracuda156",
"ports_count": 2571
}
],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"clang-16",
"R"
]
},
{
"type": "lib",
"ports": [
"R-ggplot2",
"R-ggExtra",
"R-cowplot",
"R-CRAN-recommended",
"R-assertthat",
"R-reshape2"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-testthat",
"R-pkgdown"
]
}
],
"depends_on": []
},
{
"name": "R-baycn",
"portdir": "R/R-baycn",
"version": "1.2.0",
"license": "GPL-3",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://cran.r-project.org/package=baycn",
"description": "Bayesian inference for causal networks",
"long_description": "Bayesian inference for causal networks",
"active": true,
"categories": [
"science",
"math",
"R"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"clang-16",
"R"
]
},
{
"type": "lib",
"ports": [
"R-igraph",
"R-egg",
"R-CRAN-recommended",
"R-gtools",
"R-ggplot2"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-testthat"
]
}
],
"depends_on": []
},
{
"name": "R-batchmeans",
"portdir": "R/R-batchmeans",
"version": "1.0-4",
"license": "(GPL-2 or GPL-3)",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://cran.r-project.org/package=batchmeans",
"description": "Consistent batch means estimation of Monte Carlo standard errors",
"long_description": "Consistent batch means estimation of Monte Carlo standard errors",
"active": true,
"categories": [
"science",
"math",
"R"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"R",
"clang-16"
]
},
{
"type": "lib",
"ports": [
"R-CRAN-recommended"
]
},
{
"type": "run",
"ports": [
"R"
]
}
],
"depends_on": [
{
"type": "lib",
"ports": [
"R-BayesRGMM",
"R-LTFHPlus"
]
}
]
},
{
"name": "R-basemodels",
"portdir": "R/R-basemodels",
"version": "1.1.0",
"license": "MIT",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://cran.r-project.org/package=basemodels",
"description": "Baseline models for classification and regression",
"long_description": "Baseline models for classification and regression",
"active": true,
"categories": [
"science",
"math",
"R"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"R",
"clang-16"
]
},
{
"type": "lib",
"ports": [
"R-CRAN-recommended"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-knitr",
"R-rmarkdown",
"R-caret"
]
}
],
"depends_on": []
},
{
"name": "R-bannerCommenter",
"portdir": "R/R-bannerCommenter",
"version": "1.0.0",
"license": "GPL-2+",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://cran.r-project.org/package=bannerCommenter",
"description": "Make banner comments with a consistent format",
"long_description": "Make banner comments with a consistent format",
"active": true,
"categories": [
"science",
"R"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"R",
"clang-16"
]
},
{
"type": "lib",
"ports": [
"R-CRAN-recommended"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-dplyr",
"R-knitr",
"R-rmarkdown"
]
}
],
"depends_on": []
},
{
"name": "R-bandit",
"portdir": "R/R-bandit",
"version": "0.5.1",
"license": "GPL-3",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://cran.r-project.org/package=bandit",
"description": "Functions for simple a/b split test and multi-armed bandit analysis",
"long_description": "A set of functions for doing analysis of A/B split test data and web metrics in general.",
"active": true,
"categories": [
"science",
"R"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"R",
"clang-16"
]
},
{
"type": "lib",
"ports": [
"R-gam",
"R-CRAN-recommended"
]
},
{
"type": "run",
"ports": [
"R"
]
}
],
"depends_on": []
},
{
"name": "R-baizer",
"portdir": "R/R-baizer",
"version": "0.8.0",
"license": "MIT",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://william-swl.github.io/baizer",
"description": "Useful functions for data processing",
"long_description": "Useful functions for data processing",
"active": true,
"categories": [
"science",
"R"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"clang-16",
"R"
]
},
{
"type": "lib",
"ports": [
"R-rlang",
"R-vctrs",
"R-stringr",
"R-tibble",
"R-dplyr",
"R-purrr",
"R-readxl",
"R-rematch2",
"R-tidyr",
"R-diffobj",
"R-rmarkdown",
"R-readr",
"R-openxlsx",
"R-seriation",
"R-CRAN-recommended",
"R-curl",
"R-magrittr"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-withr",
"R-testthat",
"R-roxygen2",
"R-covr"
]
}
],
"depends_on": []
},
{
"name": "R-baguette",
"portdir": "R/R-baguette",
"version": "1.0.2",
"license": "MIT",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://baguette.tidymodels.org",
"description": "Efficient model functions for bagging",
"long_description": "Efficient model functions for bagging",
"active": true,
"categories": [
"science",
"R"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"clang-16",
"R"
]
},
{
"type": "lib",
"ports": [
"R-tibble",
"R-withr",
"R-dplyr",
"R-generics",
"R-purrr",
"R-tidyr",
"R-furrr",
"R-butcher",
"R-hardhat",
"R-parsnip",
"R-rsample",
"R-dials",
"R-earth",
"R-C50",
"R-CRAN-recommended",
"R-magrittr",
"R-rlang"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-testthat",
"R-rmarkdown",
"R-covr",
"R-spelling",
"R-modeldata",
"R-recipes",
"R-yardstick",
"R-AmesHousing"
]
}
],
"depends_on": [
{
"type": "test",
"ports": [
"R-parsnip",
"R-tidyAML"
]
}
]
},
{
"name": "R-bacr",
"portdir": "R/R-bacr",
"version": "1.0.1",
"license": "GPL-2",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://cran.r-project.org/package=bacr",
"description": "Bayesian Adjustment for Confounding",
"long_description": "Bayesian Adjustment for Confounding",
"active": true,
"categories": [
"science",
"math",
"R"
],
"maintainers": [
{
"name": "vital.had",
"github": "barracuda156",
"ports_count": 2571
}
],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"R",
"clang-16"
]
},
{
"type": "lib",
"ports": [
"R-MCMCpack",
"R-CRAN-recommended"
]
},
{
"type": "run",
"ports": [
"R"
]
}
],
"depends_on": []
},
{
"name": "R-metapod",
"portdir": "R/R-metapod",
"version": "1.12.0",
"license": "GPL-3",
"platforms": "darwin",
"epoch": 0,
"replaced_by": null,
"homepage": "https://bioconductor.org/packages/metapod",
"description": "Meta-analyses on p-values of differential analyses",
"long_description": "Meta-analyses on p-values of differential analyses",
"active": true,
"categories": [
"science",
"R",
"bioconductor"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"clang-16",
"R"
]
},
{
"type": "lib",
"ports": [
"R-Rcpp",
"R-CRAN-recommended"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-knitr",
"R-testthat",
"R-rmarkdown",
"R-BiocStyle"
]
}
],
"depends_on": [
{
"type": "lib",
"ports": [
"R-csaw"
]
}
]
},
{
"name": "R-graph",
"portdir": "R/R-graph",
"version": "1.82.0",
"license": "Artistic-2",
"platforms": "darwin",
"epoch": 0,
"replaced_by": null,
"homepage": "https://bioconductor.org/packages/graph",
"description": "Package that implements some simple graph-handling capabilities",
"long_description": "Package that implements some simple graph-handling capabilities",
"active": true,
"categories": [
"graphics",
"science",
"math",
"R",
"bioconductor"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"R",
"clang-16"
]
},
{
"type": "lib",
"ports": [
"R-CRAN-recommended",
"R-BiocGenerics"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-BiocStyle",
"R-RBGL",
"R-Rgraphviz",
"R-RUnit",
"R-SparseM",
"R-knitr",
"R-XML"
]
}
],
"depends_on": [
{
"type": "lib",
"ports": [
"R-BiDAG",
"R-BiocCheck",
"R-KEGGgraph",
"R-RBGL",
"R-eulerian",
"R-gridGraphviz",
"R-classGraph",
"R-CodeDepends",
"R-Rgraphviz",
"R-rsbml",
"R-dlsem",
"R-abn",
"R-gRbase",
"R-BayesNetBP",
"R-BioNet",
"R-BiocPkgTools",
"R-pcalg",
"R-biocViews",
"R-BCDAG",
"R-pcgen",
"R-gbutils",
"R-ggm",
"R-graphite",
"R-gridDebug"
]
},
{
"type": "test",
"ports": [
"R-psych",
"R-bnlearn",
"R-SPIA",
"R-lava",
"R-bnclassify",
"R-bnstruct",
"R-igraph",
"R-rPref",
"R-S4Vectors",
"R-Matrix",
"R-arulesViz",
"R-tidygraph"
]
}
]
},
{
"name": "R-glmGamPoi",
"portdir": "R/R-glmGamPoi",
"version": "1.16.0",
"license": "GPL-2+",
"platforms": "darwin",
"epoch": 0,
"replaced_by": null,
"homepage": "https://github.com/const-ae/glmGamPoi",
"description": "Fit a Gamma-Poisson Generalized Linear Model",
"long_description": "Fit a Gamma-Poisson Generalized Linear Model",
"active": true,
"categories": [
"science",
"R",
"bioconductor"
],
"maintainers": [],
"variants": [
"clang10",
"clang11",
"clang12",
"clang13",
"clang14",
"clang15",
"clang16",
"clang50",
"clang60",
"clang70",
"clang80",
"clang90",
"clangdevel",
"g95",
"gcc10",
"gcc11",
"gcc12",
"gcc13",
"gccdevel",
"gfortran"
],
"dependencies": [
{
"type": "build",
"ports": [
"gcc13",
"R",
"clang-16"
]
},
{
"type": "lib",
"ports": [
"R-rlang",
"R-vctrs",
"R-matrixStats",
"R-BiocGenerics",
"R-DelayedArray",
"R-HDF5Array",
"R-MatrixGenerics",
"R-DelayedMatrixStats",
"R-beachmat",
"R-SummarizedExperiment",
"R-CRAN-recommended",
"R-SingleCellExperiment",
"libgcc",
"R-Rcpp",
"R-RcppArmadillo"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-statmod",
"R-zoo",
"R-dplyr",
"R-ggplot2",
"R-knitr",
"R-testthat",
"R-rmarkdown",
"R-bench",
"R-BiocStyle",
"R-limma",
"R-BiocParallel",
"R-DESeq2",
"R-edgeR"
]
}
],
"depends_on": [
{
"type": "test",
"ports": [
"R-sctransform"
]
}
]
},
{
"name": "R-genefilter",
"portdir": "R/R-genefilter",
"version": "1.86.0",
"license": "Artistic-2",
"platforms": "darwin",
"epoch": 0,
"replaced_by": null,
"homepage": "https://bioconductor.org/packages/genefilter",
"description": "Methods for filtering genes from high-throughput experiments",
"long_description": "Methods for filtering genes from high-throughput experiments",
"active": true,
"categories": [
"science",
"R",
"bioconductor"
],
"maintainers": [],
"variants": [
"clang10",
"clang11",
"clang12",
"clang13",
"clang14",
"clang15",
"clang16",
"clang50",
"clang60",
"clang70",
"clang80",
"clang90",
"clangdevel",
"g95",
"gcc10",
"gcc11",
"gcc12",
"gcc13",
"gccdevel",
"gfortran"
],
"dependencies": [
{
"type": "build",
"ports": [
"gcc13",
"R",
"clang-16"
]
},
{
"type": "lib",
"ports": [
"R-AnnotationDbi",
"R-CRAN-recommended",
"R-annotate",
"libgcc",
"R-Biobase",
"R-MatrixGenerics"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-RColorBrewer",
"R-knitr",
"R-BiocStyle",
"R-tkWidgets",
"R-ALL"
]
}
],
"depends_on": [
{
"type": "test",
"ports": [
"R-EnrichedHeatmap"
]
}
]
},
{
"name": "R-binom",
"portdir": "R/R-binom",
"version": "1.1-1.1",
"license": "GPL",
"platforms": "darwin",
"epoch": 0,
"replaced_by": null,
"homepage": "https://cran.r-project.org/package=binom",
"description": "Binomial confidence intervals for several parameterizations",
"long_description": "Constructs confidence intervals on the probability of success in a binomial experiment via several parameterizations.",
"active": true,
"categories": [
"science",
"math",
"R"
],
"maintainers": [
{
"name": "vital.had",
"github": "barracuda156",
"ports_count": 2571
}
],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"R",
"clang-16"
]
},
{
"type": "lib",
"ports": [
"R-CRAN-recommended"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-ggplot2",
"R-polynom"
]
}
],
"depends_on": [
{
"type": "lib",
"ports": [
"R-gmeta",
"R-inctools",
"R-trialr"
]
},
{
"type": "test",
"ports": [
"R-rtdists"
]
}
]
},
{
"name": "R-UCSC.utils",
"portdir": "R/R-UCSC.utils",
"version": "1.0.0",
"license": "Artistic-2",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://bioconductor.org/packages/UCSC.utils",
"description": "Low-level utilities to retrieve data from the UCSC Genome Browser",
"long_description": "Low-level utilities to retrieve data from the UCSC Genome Browser",
"active": true,
"categories": [
"science",
"R",
"bioconductor"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"R",
"clang-16"
]
},
{
"type": "lib",
"ports": [
"R-jsonlite",
"R-S4Vectors",
"R-CRAN-recommended",
"R-httr"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-RMariaDB",
"R-DBI",
"R-knitr",
"R-testthat",
"R-rmarkdown",
"R-BiocStyle",
"R-GenomeInfoDb"
]
}
],
"depends_on": [
{
"type": "lib",
"ports": [
"R-GenomeInfoDb"
]
}
]
},
{
"name": "R-TileDBArray",
"portdir": "R/R-TileDBArray",
"version": "1.14.0",
"license": "MIT",
"platforms": "darwin",
"epoch": 0,
"replaced_by": null,
"homepage": "https://github.com/LTLA/TileDBArray",
"description": "Use TileDB as a DelayedArray backend",
"long_description": "Use TileDB as a DelayedArray backend",
"active": true,
"categories": [
"databases",
"science",
"R",
"bioconductor"
],
"maintainers": [
{
"name": "vital.had",
"github": "barracuda156",
"ports_count": 2571
}
],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"clang-16",
"R"
]
},
{
"type": "lib",
"ports": [
"R-DelayedArray",
"R-tiledb",
"R-CRAN-recommended",
"R-Rcpp",
"R-S4Vectors"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-knitr",
"R-testthat",
"R-rmarkdown",
"R-BiocStyle",
"R-BiocParallel"
]
}
],
"depends_on": []
},
{
"name": "R-TH.data",
"portdir": "R/R-TH.data",
"version": "1.1-2",
"license": "GPL-3",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://cran.r-project.org/package=TH.data",
"description": "TH Data Archive",
"long_description": "TH Data Archive",
"active": true,
"categories": [
"science",
"R"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"R",
"clang-16"
]
},
{
"type": "lib",
"ports": [
"R-CRAN-recommended"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-vcd",
"R-multcomp",
"R-rms",
"R-coin",
"R-tram",
"R-trtf",
"R-ATR",
"R-colorspace",
"R-gridExtra",
"R-knitr"
]
}
],
"depends_on": [
{
"type": "lib",
"ports": [
"R-multcomp"
]
},
{
"type": "test",
"ports": [
"R-party",
"R-mboost",
"R-coin",
"R-ggparty",
"R-ipred",
"R-tramnet",
"R-trtf",
"R-bujar",
"R-maxstat",
"R-mlt",
"R-mlt.docreg",
"R-tram",
"R-stabs",
"R-partykit",
"R-tbm",
"R-flexsurv",
"R-cotram"
]
}
]
},
{
"name": "R-Structstrings",
"portdir": "R/R-Structstrings",
"version": "1.20.0",
"license": "Artistic-2",
"platforms": "darwin",
"epoch": 0,
"replaced_by": null,
"homepage": "https://github.com/FelixErnst/Structstrings",
"description": "Implementation of the dot bracket annotations with Biostrings",
"long_description": "R-Structstrings implements the widely used dot bracket annotation for storing base pairing information in structured RNA.",
"active": true,
"categories": [
"science",
"R",
"bioconductor"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"clang-16",
"R"
]
},
{
"type": "lib",
"ports": [
"R-stringr",
"R-BiocGenerics",
"R-S4Vectors",
"R-IRanges",
"R-XVector",
"R-Biostrings",
"R-CRAN-recommended",
"R-stringi",
"R-crayon"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-knitr",
"R-testthat",
"R-rmarkdown",
"R-BiocStyle"
]
}
],
"depends_on": []
},
{
"name": "R-ShortRead",
"portdir": "R/R-ShortRead",
"version": "1.62.0",
"license": "Artistic-2",
"platforms": "darwin",
"epoch": 0,
"replaced_by": null,
"homepage": "https://bioconductor.org/packages/ShortRead",
"description": "FASTQ input and manipulation",
"long_description": "FASTQ input and manipulation",
"active": true,
"categories": [
"science",
"R",
"bioconductor"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"clang-16",
"R"
]
},
{
"type": "lib",
"ports": [
"R-Biobase",
"R-S4Vectors",
"R-BiocParallel",
"R-IRanges",
"R-XVector",
"R-zlibbioc",
"R-Rhtslib",
"R-Biostrings",
"R-GenomeInfoDb",
"R-GenomicAlignments",
"R-GenomicRanges",
"R-Rsamtools",
"R-hwriter",
"R-CRAN-recommended",
"R-pwalign",
"R-latticeExtra",
"R-BiocGenerics"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-RUnit",
"R-BiocStyle",
"R-GenomicFeatures",
"R-biomaRt",
"R-yeastNagalakshmi"
]
}
],
"depends_on": [
{
"type": "lib",
"ports": [
"R-systemPipeR"
]
},
{
"type": "test",
"ports": [
"R-BiocParallel",
"R-systemPipeRdata",
"R-S4Vectors"
]
}
]
},
{
"name": "R-SQLDataFrame",
"portdir": "R/R-SQLDataFrame",
"version": "1.18.0",
"license": "LGPL-3",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://bioconductor.org/packages/SQLDataFrame",
"description": "Representation of SQL database in DataFrame metaphor",
"long_description": "Representation of SQL database in DataFrame metaphor",
"active": true,
"categories": [
"databases",
"science",
"R",
"bioconductor"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"clang-16",
"R"
]
},
{
"type": "lib",
"ports": [
"R-RSQLite",
"R-S4Vectors",
"R-DelayedArray",
"R-duckdb",
"R-CRAN-recommended",
"R-DBI",
"R-BiocGenerics"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-knitr",
"R-testthat",
"R-rmarkdown",
"R-BiocStyle"
]
}
],
"depends_on": []
},
{
"name": "R-RBGL",
"portdir": "R/R-RBGL",
"version": "1.80.0",
"license": "Artistic-2",
"platforms": "darwin",
"epoch": 0,
"replaced_by": null,
"homepage": "https://bioconductor.org/packages/RBGL",
"description": "Interface to the graph algorithms contained in the Boost library",
"long_description": "Interface to the graph algorithms contained in the Boost library",
"active": true,
"categories": [
"devel",
"science",
"R",
"bioconductor"
],
"maintainers": [
{
"name": "vital.had",
"github": "barracuda156",
"ports_count": 2571
}
],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"R",
"clang-16"
]
},
{
"type": "lib",
"ports": [
"R-graph",
"R-CRAN-recommended",
"R-BH"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-Rgraphviz",
"R-RUnit",
"R-knitr",
"R-XML",
"R-BiocGenerics",
"R-BiocStyle"
]
}
],
"depends_on": [
{
"type": "lib",
"ports": [
"R-pcalg",
"R-BiocPkgTools",
"R-BiDAG",
"R-biocViews",
"R-gRbase",
"R-eff2",
"R-BioNet"
]
},
{
"type": "test",
"ports": [
"R-KEGGgraph",
"R-graph"
]
}
]
},
{
"name": "R-R6",
"portdir": "R/R-R6",
"version": "2.5.1.9000",
"license": "MIT",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://R6.r-lib.org",
"description": "Encapsulated object-oriented programming for R",
"long_description": "Encapsulated object-oriented programming for R",
"active": true,
"categories": [
"devel",
"science",
"R"
],
"maintainers": [
{
"name": "vital.had",
"github": "barracuda156",
"ports_count": 2571
}
],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"R",
"clang-16"
]
},
{
"type": "lib",
"ports": [
"R-CRAN-recommended"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-scales",
"R-testthat",
"R-tidyverse",
"R-microbenchmark",
"R-lobstr",
"R-ggplot2"
]
}
],
"depends_on": [
{
"type": "lib",
"ports": [
"R-ABM",
"R-AIPW",
"R-cmdstanr",
"R-lumberjack",
"R-huxtable",
"R-dipsaus",
"R-lmtp",
"R-OpenImageR",
"R-hmer",
"R-clustermq",
"R-osqp",
"R-SBCK",
"R-gpboost",
"R-openxlsx2",
"R-fabletools",
"R-sbm",
"R-bsynth",
"R-mRpostman",
"R-thor",
"R-pkgcache",
"R-pkgdepends",
"R-mlr3resampling",
"R-mlr3tuning",
"R-bsvars",
"R-crew",
"R-DBItest",
"R-testthat",
"R-redux",
"R-nimble",
"R-PlackettLuce",
"R-PlaneGeometry",
"R-fauxpas",
"R-RestRserve",
"R-SSEparser",
"R-fiery",
"R-fixtuRes",
"R-mlapi",
"R-arrangements",
"R-batchtools",
"R-mlr3learners",
"R-roxygen2",
"R-multidplyr",
"R-officer",
"R-blatent",
"R-ooplah",
"R-optic",
"R-boodist",
"R-jmv",
"R-dockerfiler",
"R-deFit",
"R-rgl",
"R-cgalMeshes",
"R-cgalPolygons",
"R-CVXR",
"R-ggExtra",
"R-crul",
"R-ipumsr",
"R-plumber",
"R-dplyr",
"R-arrow",
"R-tsibbletalk",
"R-txtq",
"R-targets",
"R-pool",
"R-progress",
"R-rotor",
"R-compareMCMCs",
"R-fmeffects",
"R-crew.cluster",
"R-callr",
"R-httpuv",
"R-MetricGraph",
"R-hipread",
"R-hmmTMB",
"R-gptstudio",
"R-set6",
"R-intmap",
"R-isqg",
"R-waiter",
"R-webdriver",
"R-glmmrBase",
"R-rsdmx",
"R-keyring",
"R-rstack",
"R-parabar",
"R-rtson",
"R-lazyarray",
"R-yahoofinancer",
"R-shiny",
"R-matrixset",
"R-ao",
"R-aorsf",
"R-missSBM",
"R-charlatan",
"R-safetensors",
"R-scales",
"R-selectr",
"R-sl3",
"R-palm",
"R-crosstalk",
"R-processx",
"R-shiny.i18n",
"R-shiny.semantic",
"R-readr",
"R-data.tree",
"R-data.validator",
"R-dbplyr",
"R-delayed",
"R-desc",
"R-bbotk",
"R-httr2",
"R-optimizeR",
"R-promises",
"R-vcr",
"R-webmockr",
"R-websocket",
"R-r6extended",
"R-rcmdcheck",
"R-hdf5r",
"R-httr",
"R-sass",
"R-pkgbuild",
"R-ipc",
"R-R6DS",
"R-R6P",
"R-R6causal",
"R-ROOPSD",
"R-RSQL",
"R-ReMFPCA",
"R-dfdr",
"R-dictionar6",
"R-shinytest",
"R-DTSg",
"R-rbmi",
"R-ast2ast",
"R-storr",
"R-targeted",
"R-lightgbm",
"R-tessellation",
"R-text2vec",
"R-tidygraph",
"R-paradox",
"R-rearrr",
"R-regport",
"R-reqres",
"R-rgudhi",
"R-rhub",
"R-GREMLINS",
"R-tinkr",
"R-lgr",
"R-tmle3",
"R-mlr3misc",
"R-iml",
"R-rim",
"R-ring",
"R-mlr3",
"R-mlr3mbo",
"R-mlr3pipelines",
"R-jmvcore",
"R-villager",
"R-gdalBindings"
]
},
{
"type": "test",
"ports": [
"R-checkmate",
"R-covr",
"R-r2d3",
"R-waldo",
"R-leaflet",
"R-r6methods",
"R-later",
"R-box",
"R-zip",
"R-aoos",
"R-mockery",
"R-runMCMCbtadjust",
"R-ps",
"R-debugme",
"R-renv",
"R-sparklyr"
]
}
]
},
{
"name": "R-KEGGgraph",
"portdir": "R/R-KEGGgraph",
"version": "1.64.0",
"license": "GPL-2+",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://bioconductor.org/packages/KEGGgraph",
"description": "A graph approach to KEGG pathway in R and Bioconductor",
"long_description": "A graph approach to KEGG pathway in R and Bioconductor",
"active": true,
"categories": [
"science",
"R"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"clang-16",
"R"
]
},
{
"type": "lib",
"ports": [
"R-graph",
"R-Rgraphviz",
"R-CRAN-recommended",
"R-RCurl",
"R-XML"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-RColorBrewer",
"R-testthat",
"R-RBGL",
"R-SPIA"
]
}
],
"depends_on": [
{
"type": "lib",
"ports": [
"R-iCARH",
"R-SPIA"
]
},
{
"type": "test",
"ports": [
"R-kangar00"
]
}
]
},
{
"name": "R-FactoMineR",
"portdir": "R/R-FactoMineR",
"version": "2.11",
"license": "GPL-2+",
"platforms": "darwin",
"epoch": 0,
"replaced_by": null,
"homepage": "http://factominer.free.fr",
"description": "Multivariate exploratory data analysis and data mining",
"long_description": "Multivariate exploratory data analysis and data mining",
"active": true,
"categories": [
"science",
"R"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"clang-16",
"R"
]
},
{
"type": "lib",
"ports": [
"R-ggrepel",
"R-emmeans",
"R-car",
"R-leaps",
"R-scatterplot3d",
"R-ellipse",
"R-flashClust",
"R-multcompView",
"R-CRAN-recommended",
"R-ggplot2",
"R-DT"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-knitr",
"R-markdown",
"R-Factoshiny",
"R-missMDA"
]
}
],
"depends_on": [
{
"type": "lib",
"ports": [
"R-mimi",
"R-missMDA",
"R-factoextra",
"R-fdm2id",
"R-RcmdrPlugin.FactoMineR",
"R-FactoInvestigate",
"R-Factoshiny",
"R-GDAtools"
]
}
]
},
{
"name": "R-DelayedMatrixStats",
"portdir": "R/R-DelayedMatrixStats",
"version": "1.26.0",
"license": "MIT",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://github.com/PeteHaitch/DelayedMatrixStats",
"description": "Functions that apply to rows and columns of DelayedMatrix objects",
"long_description": "Functions that apply to rows and columns of DelayedMatrix objects",
"active": true,
"categories": [
"science",
"R",
"bioconductor"
],
"maintainers": [
{
"name": "vital.had",
"github": "barracuda156",
"ports_count": 2571
}
],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"clang-16",
"R"
]
},
{
"type": "lib",
"ports": [
"R-DelayedArray",
"R-MatrixGenerics",
"R-sparseMatrixStats",
"R-CRAN-recommended",
"R-S4Vectors",
"R-IRanges"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-matrixStats",
"R-knitr",
"R-testthat",
"R-rmarkdown",
"R-microbenchmark",
"R-profmem",
"R-BiocStyle",
"R-HDF5Array"
]
}
],
"depends_on": [
{
"type": "lib",
"ports": [
"R-glmGamPoi"
]
},
{
"type": "test",
"ports": [
"R-MatrixGenerics",
"R-ScaledMatrix"
]
}
]
},
{
"name": "R-ChemmineR",
"portdir": "R/R-ChemmineR",
"version": "3.56.0",
"license": "Artistic-2",
"platforms": "darwin",
"epoch": 0,
"replaced_by": null,
"homepage": "https://github.com/girke-lab/ChemmineR",
"description": "Cheminformatics toolkit for R",
"long_description": "Cheminformatics toolkit for R",
"active": true,
"categories": [
"science",
"R",
"bioconductor"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"clang-16",
"R"
]
},
{
"type": "lib",
"ports": [
"R-base64enc",
"R-jsonlite",
"R-png",
"R-stringi",
"R-DBI",
"R-digest",
"R-ggplot2",
"R-gridExtra",
"R-DT",
"R-RCurl",
"R-rjson",
"R-BiocGenerics",
"R-rsvg",
"R-CRAN-recommended",
"R-BH",
"R-Rcpp"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-knitr",
"R-rmarkdown",
"R-snow",
"R-BiocManager",
"R-gplots",
"R-scatterplot3d",
"R-BiocStyle",
"R-RSQLite",
"R-bibtex",
"R-RPostgreSQL",
"R-knitcitations",
"R-ChemmineDrugs",
"R-ChemmineOB",
"R-fmcsR",
"R-knitrBootstrap"
]
}
],
"depends_on": [
{
"type": "lib",
"ports": [
"R-ChemmineDrugs",
"R-fmcsR"
]
},
{
"type": "test",
"ports": [
"R-ChemmineOB"
]
}
]
},
{
"name": "R-BiocParallel",
"portdir": "R/R-BiocParallel",
"version": "1.38.0",
"license": "(GPL-2 or GPL-3)",
"platforms": "darwin",
"epoch": 0,
"replaced_by": null,
"homepage": "https://bioconductor.org/packages/BiocParallel",
"description": "Bioconductor facilities for parallel evaluation",
"long_description": "Bioconductor facilities for parallel evaluation",
"active": true,
"categories": [
"science",
"parallel",
"R",
"bioconductor"
],
"maintainers": [
{
"name": "vital.had",
"github": "barracuda156",
"ports_count": 2571
}
],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"clang-16",
"R"
]
},
{
"type": "lib",
"ports": [
"R-futile.logger",
"R-CRAN-recommended",
"R-cpp11",
"R-snow",
"R-BH"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-BiocStyle",
"R-GenomicAlignments",
"R-GenomicRanges",
"R-Rsamtools",
"R-ShortRead",
"R-Rmpi",
"R-batchtools",
"R-VariantAnnotation",
"R-data.table",
"R-RUnit",
"R-knitr",
"R-BBmisc",
"R-doParallel",
"R-foreach",
"R-BiocGenerics"
]
}
],
"depends_on": [
{
"type": "lib",
"ports": [
"R-DESeq2",
"R-GenomicAlignments",
"R-Rsamtools",
"R-mixOmics",
"R-bluster",
"R-csaw",
"R-robin",
"R-oosse",
"R-ShortRead",
"R-BiocNeighbors",
"R-BiocSingular"
]
},
{
"type": "test",
"ports": [
"R-SeqArray",
"R-TileDBArray",
"R-glmGamPoi",
"R-clustermq",
"R-S4Arrays",
"R-rhdf5",
"R-beachmat",
"R-Corbi"
]
}
]
},
{
"name": "R-BiocNeighbors",
"portdir": "R/R-BiocNeighbors",
"version": "1.22.0",
"license": "GPL-3",
"platforms": "darwin",
"epoch": 0,
"replaced_by": null,
"homepage": "https://bioconductor.org/packages/BiocNeighbors",
"description": "Nearest neighbor detection for Bioconductor packages",
"long_description": "Nearest neighbor detection for Bioconductor packages",
"active": true,
"categories": [
"science",
"R",
"bioconductor"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"clang-16",
"R"
]
},
{
"type": "lib",
"ports": [
"R-BiocParallel",
"R-RcppHNSW",
"R-CRAN-recommended",
"R-Rcpp",
"R-S4Vectors"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-RcppAnnoy",
"R-knitr",
"R-testthat",
"R-rmarkdown",
"R-FNN",
"R-BiocStyle"
]
}
],
"depends_on": [
{
"type": "lib",
"ports": [
"R-bluster"
]
}
]
},
{
"name": "R-BiocCheck",
"portdir": "R/R-BiocCheck",
"version": "1.40.0",
"license": "Artistic-2",
"platforms": "{darwin any}",
"epoch": 0,
"replaced_by": null,
"homepage": "https://bioconductor.org/packages/BiocCheck",
"description": "Bioconductor-specific package checks",
"long_description": "Bioconductor-specific package checks",
"active": true,
"categories": [
"science",
"R",
"bioconductor"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"clang-16",
"R"
]
},
{
"type": "lib",
"ports": [
"R-rvest",
"R-stringdist",
"R-BiocManager",
"R-httr2",
"R-graph",
"R-biocViews",
"R-BiocFileCache",
"R-BiocBaseUtils",
"R-CRAN-recommended",
"R-callr",
"R-knitr"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-jsonlite",
"R-RUnit",
"R-callr",
"R-rmarkdown",
"R-devtools",
"R-usethis",
"R-downloader",
"R-BiocGenerics",
"R-BiocStyle",
"R-Biobase"
]
}
],
"depends_on": []
},
{
"name": "R-Biobase",
"portdir": "R/R-Biobase",
"version": "2.64.0",
"license": "Artistic-2",
"platforms": "darwin",
"epoch": 0,
"replaced_by": null,
"homepage": "https://bioconductor.org/packages/Biobase",
"description": "Base functions for Bioconductor",
"long_description": "Base functions for Bioconductor",
"active": true,
"categories": [
"science",
"R",
"bioconductor"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"R",
"clang-16"
]
},
{
"type": "lib",
"ports": [
"R-CRAN-recommended",
"R-BiocGenerics"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-tkWidgets",
"R-ALL",
"R-golubEsets",
"R-RUnit",
"R-knitr",
"R-BiocStyle",
"R-limma"
]
}
],
"depends_on": [
{
"type": "lib",
"ports": [
"R-RobLox",
"R-ShortRead",
"R-MeSHDbi",
"R-genefilter",
"R-bioDist",
"R-biobroom",
"R-biocViews",
"R-NMF",
"R-DESeq2",
"R-VariantAnnotation",
"R-multtest",
"R-pcaMethods",
"R-SummarizedExperiment",
"R-annotate",
"R-ALL",
"R-GenomicFeatures",
"R-BSgenomeForge",
"R-BayesKnockdown",
"R-BioNet",
"R-golubEsets",
"R-MultiAssayExperiment",
"R-AnnotationDbi",
"R-AnnotationForge"
]
},
{
"type": "test",
"ports": [
"R-amap",
"R-BiocCheck",
"R-edgeR",
"R-pkgmaker",
"R-widgetTools",
"R-kebabs",
"R-rsconnect",
"R-Seurat",
"R-hexbin",
"R-SeqArray",
"R-survcomp"
]
}
]
},
{
"name": "R-spacefillr",
"portdir": "R/R-spacefillr",
"version": "0.3.3",
"license": "MIT",
"platforms": "darwin",
"epoch": 0,
"replaced_by": null,
"homepage": "https://github.com/tylermorganwall/spacefillr",
"description": "Space-filling random and quasi-random sequences",
"long_description": "Space-filling random and quasi-random sequences",
"active": true,
"categories": [
"science",
"math",
"R"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"R",
"clang-16"
]
},
{
"type": "lib",
"ports": [
"R-Rcpp",
"R-CRAN-recommended"
]
},
{
"type": "run",
"ports": [
"R"
]
}
],
"depends_on": [
{
"type": "lib",
"ports": [
"R-GLDEX",
"R-TruncatedNormal",
"R-mlr3mbo"
]
},
{
"type": "test",
"ports": [
"R-qrng",
"R-paradox"
]
}
]
},
{
"name": "R-polyCub",
"portdir": "R/R-polyCub",
"version": "0.9.1",
"license": "GPL-2",
"platforms": "darwin",
"epoch": 0,
"replaced_by": null,
"homepage": "https://github.com/bastistician/polyCub",
"description": "Cubature over polygonal domains",
"long_description": "Cubature over polygonal domains",
"active": true,
"categories": [
"science",
"math",
"R"
],
"maintainers": [],
"variants": [],
"dependencies": [
{
"type": "build",
"ports": [
"clang-16",
"R"
]
},
{
"type": "lib",
"ports": [
"R-CRAN-recommended",
"R-sp"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-markdown",
"R-microbenchmark",
"R-sf",
"R-spatstat.geom",
"R-cubature",
"R-mvtnorm",
"R-statmod",
"R-knitr"
]
}
],
"depends_on": []
},
{
"name": "R-gausscov",
"portdir": "R/R-gausscov",
"version": "1.1.3",
"license": "GPL-3",
"platforms": "darwin",
"epoch": 0,
"replaced_by": null,
"homepage": "https://cran.r-project.org/package=gausscov",
"description": "Gaussian covariate method for variable selection",
"long_description": "Gaussian covariate method for variable selection",
"active": true,
"categories": [
"science",
"math",
"R"
],
"maintainers": [
{
"name": "vital.had",
"github": "barracuda156",
"ports_count": 2571
}
],
"variants": [
"clang10",
"clang11",
"clang12",
"clang13",
"clang14",
"clang15",
"clang16",
"clang50",
"clang60",
"clang70",
"clang80",
"clang90",
"clangdevel",
"g95",
"gcc10",
"gcc11",
"gcc12",
"gcc13",
"gccdevel",
"gfortran"
],
"dependencies": [
{
"type": "build",
"ports": [
"R",
"clang-16",
"gcc13"
]
},
{
"type": "lib",
"ports": [
"libgcc",
"R-CRAN-recommended"
]
},
{
"type": "run",
"ports": [
"R"
]
}
],
"depends_on": []
},
{
"name": "R-copre",
"portdir": "R/R-copre",
"version": "0.2.1",
"license": "GPL-2+",
"platforms": "darwin",
"epoch": 0,
"replaced_by": null,
"homepage": "https://cran.r-project.org/package=copre",
"description": "Tools for non-parametric martingale posterior sampling",
"long_description": "Performs Bayesian non-parametric density estimation using Martingale posterior distributions including the Copula Resampling (CopRe) algorithm.",
"active": true,
"categories": [
"science",
"math",
"R"
],
"maintainers": [
{
"name": "vital.had",
"github": "barracuda156",
"ports_count": 2571
}
],
"variants": [
"clang10",
"clang11",
"clang12",
"clang13",
"clang14",
"clang15",
"clang16",
"clang50",
"clang60",
"clang70",
"clang80",
"clang90",
"clangdevel",
"g95",
"gcc10",
"gcc11",
"gcc12",
"gcc13",
"gccdevel",
"gfortran"
],
"dependencies": [
{
"type": "build",
"ports": [
"gcc13",
"R",
"clang-16"
]
},
{
"type": "lib",
"ports": [
"R-RcppArmadillo",
"R-abind",
"R-pracma",
"R-dirichletprocess",
"R-CRAN-recommended",
"libgcc",
"R-BH",
"R-Rcpp"
]
},
{
"type": "run",
"ports": [
"R"
]
},
{
"type": "test",
"ports": [
"R-ggplot2"
]
}
],
"depends_on": []
},
{
"name": "libsass",
"portdir": "www/libsass",
"version": "3.6.6",
"license": "MIT",
"platforms": "darwin",
"epoch": 0,
"replaced_by": null,
"homepage": "https://sass-lang.com/libsass",
"description": "A C/C++ implementation of a Sass compiler",
"long_description": "LibSass is a C/C++ port of the Sass engine. The point is to be simple, faster, and easy to integrate.",
"active": true,
"categories": [
"textproc",
"www"
],
"maintainers": [
{
"name": "cal",
"github": "neverpanic",
"ports_count": 53
}
],
"variants": [
"universal"
],
"dependencies": [
{
"type": "build",
"ports": [
"autoconf",
"automake",
"libtool",
"clang-16"
]
}
],
"depends_on": [
{
"type": "lib",
"ports": [
"astroid",
"sassc"
]
}
]
},
{
"name": "libdevil",
"portdir": "devel/libdevil",
"version": "1.8.0",
"license": "LGPL-2.1",
"platforms": "darwin",
"epoch": 0,
"replaced_by": null,
"homepage": "https://openil.sourceforge.net",
"description": "Library to develop applications with powerful image loading capabilities",
"long_description": "Developer's Image Library (DevIL) is a programmer's library to develop applications with very powerful image loading capabilities, yet is easy for a developer to learn and use. Ultimate control of images is left to the developer, so unnecessary conversions, etc. are not performed. DevIL utilizes a simple, yet powerful, syntax. DevIL can load, save, convert, manipulate, filter and display a wide variety of image formats. Formerly known as OpenIL, but the name was changed due to SGI's request.",
"active": true,
"categories": [
"devel",
"multimedia"
],
"maintainers": [
{
"name": "ryandesign",
"github": "ryandesign",
"ports_count": 1827
}
],
"variants": [
"debug",
"universal"
],
"dependencies": [
{
"type": "build",
"ports": [
"cmake",
"clang-16"
]
},
{
"type": "lib",
"ports": [
"lcms2",
"libjpeg-turbo",
"libmng",
"zlib",
"squish",
"tiff",
"openexr2",
"libpng",
"jasper"
]
}
],
"depends_on": [
{
"type": "lib",
"ports": [
"love-0.7",
"love-0.8",
"love-0.9",
"cegui"
]
}
]
},
{
"name": "openslide",
"portdir": "graphics/openslide",
"version": "4.0.0",
"license": "LGPL-2.1",
"platforms": "darwin",
"epoch": 0,
"replaced_by": null,
"homepage": "https://openslide.org/",
"description": "A C library for reading virtual slides.",
"long_description": "OpenSlide is a C library that provides a simple interface for reading whole-slide images, also known as virtual slides, which are high-resolution images used in digital pathology. These images can occupy tens of gigabytes when uncompressed, and so cannot be easily read using standard tools or libraries, which are designed for images that can be comfortably uncompressed into RAM. Whole-slide images are typically multi-resolution; OpenSlide allows reading a small amount of image data at the resolution closest to a desired zoom level. OpenSlide can read slides in the Aperio (.svs or .tif), DICOM (.dcm), Hamamatsu (.ndpi, .vms, or .vmu), Leica (.scn), MIRAX (.mrxs), Philips (.tiff), Sakura (.svslide), Trestle (.tif), Ventana (.bif or .tif), and generic tiled TIFF (.tif) formats.",
"active": true,
"categories": [
"graphics"
],
"maintainers": [
{
"name": "bgilbert",
"github": "bgilbert",
"ports_count": 15
}
],
"variants": [
"universal"
],
"dependencies": [
{
"type": "build",
"ports": [
"meson",
"ninja",
"pkgconfig",
"clang-16"
]
},
{
"type": "extract",
"ports": [
"xz"
]
},
{
"type": "lib",
"ports": [
"libjpeg-turbo",
"libpng",
"openjpeg",
"zlib",
"libxml2",
"libdicom",
"tiff",
"sqlite3",
"glib2",
"cairo",
"gdk-pixbuf2"
]
}
],
"depends_on": [
{
"type": "lib",
"ports": [
"py27-openslide",
"py35-openslide",
"py36-openslide",
"py37-openslide",
"vips",
"py39-openslide",
"timg",
"py38-openslide",
"py310-openslide",
"py311-openslide",
"py312-openslide",
"py313-openslide"
]
}
]
},
{
"name": "openvrml",
"portdir": "graphics/openvrml",
"version": "0.18.9",
"license": "LGPL-3 and GPL-3",
"platforms": "darwin",
"epoch": 0,
"replaced_by": null,
"homepage": "http://www.openvrml.org/",
"description": "a cross-platform VRML and X3D browser and C++ runtime library",
"long_description": "OpenVRML is a free cross-platform runtime for VRML and X3D available under the GNU Lesser General Public License. The OpenVRML distribution includes libraries you can use to add VRML/X3D support to an application. On platforms where GTK+ is available, OpenVRML also provides a plug-in to render VRML/X3D worlds in Web browsers.",
"active": false,
"categories": [
"graphics",
"x11"
],
"maintainers": [
{
"name": "raphael",
"github": "raphael-st",
"ports_count": 18
}
],
"variants": [
"js_spidermonkey",
"opengl",
"xembed",
"player",
"x11",
"universal"
],
"dependencies": [
{
"type": "build",
"ports": [
"pkgconfig",
"clang-9.0"
]
},
{
"type": "lib",
"ports": [
"libsdl",
"libtool",
"fontconfig",
"libjpeg-turbo",
"zlib",
"libxml2",
"libGLU",
"mesa",
"libiconv",
"boost"
]
}
],
"depends_on": []
},
{
"name": "amber-lang",
"portdir": "lang/amber-lang",
"version": "0.3.1-alpha",
"license": "GPL-3",
"platforms": "darwin",
"epoch": 0,
"replaced_by": null,
"homepage": "https://amber-lang.com",
"description": "Amber the programming language compiled to bash",
"long_description": "Programming language that compiles to Bash. It's a high level programming language that makes it easy to create shell scripts. It's particularly well suited for cloud services.",
"active": true,
"categories": [
"lang"
],
"maintainers": [
{
"name": "herby.gillot",
"github": "herbygillot",
"ports_count": 1019
}
],
"variants": [
"universal"
],
"dependencies": [
{
"type": "build",
"ports": [
"cargo",
"legacy-support",
"rust",
"clang-16"
]
},
{
"type": "lib",
"ports": [
"libunwind"
]
}
],
"depends_on": []
}
]
}