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"file": " /opt/local/include/seqan/align/dp_trace_segment.h\n"
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{
"file": " /opt/local/include/seqan/align/dp_traceback_adaptor.h\n"
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{
"file": " /opt/local/include/seqan/align/dp_traceback_impl.h\n"
},
{
"file": " /opt/local/include/seqan/align/evaluate_alignment.h\n"
},
{
"file": " /opt/local/include/seqan/align/fragment.h\n"
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{
"file": " /opt/local/include/seqan/align/gap_anchor.h\n"
},
{
"file": " /opt/local/include/seqan/align/gapped_value_type.h\n"
},
{
"file": " /opt/local/include/seqan/align/gaps_anchor.h\n"
},
{
"file": " /opt/local/include/seqan/align/gaps_array.h\n"
},
{
"file": " /opt/local/include/seqan/align/gaps_base.h\n"
},
{
"file": " /opt/local/include/seqan/align/gaps_iterator_anchor.h\n"
},
{
"file": " /opt/local/include/seqan/align/gaps_iterator_array.h\n"
},
{
"file": " /opt/local/include/seqan/align/gaps_iterator_base.h\n"
},
{
"file": " /opt/local/include/seqan/align/global_alignment_banded.h\n"
},
{
"file": " /opt/local/include/seqan/align/global_alignment_hirschberg_impl.h\n"
},
{
"file": " /opt/local/include/seqan/align/global_alignment_myers_hirschberg_impl.h\n"
},
{
"file": " /opt/local/include/seqan/align/global_alignment_myers_impl.h\n"
},
{
"file": " /opt/local/include/seqan/align/global_alignment_specialized.h\n"
},
{
"file": " /opt/local/include/seqan/align/global_alignment_unbanded.h\n"
},
{
"file": " /opt/local/include/seqan/align/local_alignment_banded.h\n"
},
{
"file": " /opt/local/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h\n"
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{
"file": " /opt/local/include/seqan/align/local_alignment_enumeration.h\n"
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{
"file": " /opt/local/include/seqan/align/local_alignment_enumeration_banded.h\n"
},
{
"file": " /opt/local/include/seqan/align/local_alignment_enumeration_unbanded.h\n"
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{
"file": " /opt/local/include/seqan/align/local_alignment_unbanded.h\n"
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{
"file": " /opt/local/include/seqan/align/local_alignment_waterman_eggert_impl.h\n"
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{
"file": " /opt/local/include/seqan/align/matrix_base.h\n"
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{
"file": " /opt/local/include/seqan/align_extend.h\n"
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{
"file": " /opt/local/include/seqan/align_extend/align_extend.h\n"
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{
"file": " /opt/local/include/seqan/align_extend/align_extend_base.h\n"
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{
"file": " /opt/local/include/seqan/align_extend/dp_scout_xdrop.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/async_wave_execution_interface.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/dp_kernel_adaptor.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/dp_parallel_execution_policies.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/dp_parallel_scout.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/dp_parallel_scout_simd.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/dp_settings.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/dp_traits.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/parallel_align_interface.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/wavefront_alignment_executor.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/wavefront_alignment_result.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/wavefront_alignment_scheduler.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/wavefront_alignment_task.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/wavefront_alignment_thread_local_storage.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/wavefront_task.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/wavefront_task_event.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/wavefront_task_executor.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/wavefront_task_queue.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/wavefront_task_scheduler.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/wavefront_task_util.h\n"
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"file": " /opt/local/include/seqan/align_profile.h\n"
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{
"file": " /opt/local/include/seqan/align_profile/add_to_profile.h\n"
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{
"file": " /opt/local/include/seqan/align_profile/score_profile_seq.h\n"
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{
"file": " /opt/local/include/seqan/align_split.h\n"
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{
"file": " /opt/local/include/seqan/align_split/align_split_interface.h\n"
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"file": " /opt/local/include/seqan/align_split/dp_scout_split.h\n"
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"file": " /opt/local/include/seqan/alignment_free.h\n"
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{
"file": " /opt/local/include/seqan/alignment_free/af_d2.h\n"
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"file": " /opt/local/include/seqan/alignment_free/af_d2star.h\n"
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{
"file": " /opt/local/include/seqan/alignment_free/af_d2z.h\n"
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{
"file": " /opt/local/include/seqan/alignment_free/af_n2.h\n"
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"file": " /opt/local/include/seqan/alignment_free/alignment_free_base.h\n"
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{
"file": " /opt/local/include/seqan/alignment_free/alignment_free_comparison.h\n"
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"file": " /opt/local/include/seqan/alignment_free/kmer_functions.h\n"
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"file": " /opt/local/include/seqan/arg_parse.h\n"
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"file": " /opt/local/include/seqan/arg_parse/arg_parse_argument.h\n"
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"file": " /opt/local/include/seqan/arg_parse/arg_parse_ctd_support.h\n"
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"file": " /opt/local/include/seqan/arg_parse/arg_parse_doc.h\n"
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"file": " /opt/local/include/seqan/arg_parse/arg_parse_exceptions.h\n"
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"file": " /opt/local/include/seqan/arg_parse/arg_parse_option.h\n"
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"file": " /opt/local/include/seqan/arg_parse/arg_parse_parse.h\n"
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"file": " /opt/local/include/seqan/arg_parse/arg_parse_type_support.h\n"
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"file": " /opt/local/include/seqan/arg_parse/arg_parse_version_check.h\n"
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"file": " /opt/local/include/seqan/arg_parse/argument_parser.h\n"
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"file": " /opt/local/include/seqan/arg_parse/tool_doc.h\n"
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"file": " /opt/local/include/seqan/arg_parse/xml_support.h\n"
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"file": " /opt/local/include/seqan/bam_io.h\n"
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"file": " /opt/local/include/seqan/bam_io/bam_alignment_record.h\n"
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{
"file": " /opt/local/include/seqan/bam_io/bam_alignment_record_util.h\n"
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"file": " /opt/local/include/seqan/bam_io/bam_file.h\n"
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"file": " /opt/local/include/seqan/bam_io/bam_header_record.h\n"
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"file": " /opt/local/include/seqan/bam_io/bam_index_bai.h\n"
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"file": " /opt/local/include/seqan/bam_io/bam_io_context.h\n"
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"file": " /opt/local/include/seqan/bam_io/bam_sam_conversion.h\n"
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"file": " /opt/local/include/seqan/bam_io/bam_scanner_cache.h\n"
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"file": " /opt/local/include/seqan/bam_io/bam_tags_dict.h\n"
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"file": " /opt/local/include/seqan/bam_io/cigar.h\n"
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"file": " /opt/local/include/seqan/bam_io/read_bam.h\n"
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"file": " /opt/local/include/seqan/bam_io/read_sam.h\n"
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"file": " /opt/local/include/seqan/bam_io/write_bam.h\n"
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"file": " /opt/local/include/seqan/bam_io/write_sam.h\n"
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"file": " /opt/local/include/seqan/basic/allocator_to_std.h\n"
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"file": " /opt/local/include/seqan/align/gaps_anchor.h\n"
},
{
"file": " /opt/local/include/seqan/align/gaps_array.h\n"
},
{
"file": " /opt/local/include/seqan/align/gaps_base.h\n"
},
{
"file": " /opt/local/include/seqan/align/gaps_iterator_anchor.h\n"
},
{
"file": " /opt/local/include/seqan/align/gaps_iterator_array.h\n"
},
{
"file": " /opt/local/include/seqan/align/gaps_iterator_base.h\n"
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{
"file": " /opt/local/include/seqan/align/global_alignment_banded.h\n"
},
{
"file": " /opt/local/include/seqan/align/global_alignment_hirschberg_impl.h\n"
},
{
"file": " /opt/local/include/seqan/align/global_alignment_myers_hirschberg_impl.h\n"
},
{
"file": " /opt/local/include/seqan/align/global_alignment_myers_impl.h\n"
},
{
"file": " /opt/local/include/seqan/align/global_alignment_specialized.h\n"
},
{
"file": " /opt/local/include/seqan/align/global_alignment_unbanded.h\n"
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{
"file": " /opt/local/include/seqan/align/local_alignment_banded.h\n"
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{
"file": " /opt/local/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h\n"
},
{
"file": " /opt/local/include/seqan/align/local_alignment_enumeration.h\n"
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{
"file": " /opt/local/include/seqan/align/local_alignment_enumeration_banded.h\n"
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{
"file": " /opt/local/include/seqan/align/local_alignment_enumeration_unbanded.h\n"
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{
"file": " /opt/local/include/seqan/align/local_alignment_unbanded.h\n"
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{
"file": " /opt/local/include/seqan/align/local_alignment_waterman_eggert_impl.h\n"
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{
"file": " /opt/local/include/seqan/align/matrix_base.h\n"
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{
"file": " /opt/local/include/seqan/align_extend.h\n"
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{
"file": " /opt/local/include/seqan/align_extend/align_extend.h\n"
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{
"file": " /opt/local/include/seqan/align_extend/align_extend_base.h\n"
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{
"file": " /opt/local/include/seqan/align_extend/dp_scout_xdrop.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/async_wave_execution_interface.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/dp_kernel_adaptor.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/dp_parallel_execution_policies.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/dp_parallel_scout.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/dp_parallel_scout_simd.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/dp_settings.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/dp_traits.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/parallel_align_interface.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/wavefront_alignment_executor.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/wavefront_alignment_result.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/wavefront_alignment_scheduler.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/wavefront_alignment_task.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/wavefront_alignment_thread_local_storage.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/wavefront_task.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/wavefront_task_event.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/wavefront_task_executor.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/wavefront_task_queue.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/wavefront_task_scheduler.h\n"
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{
"file": " /opt/local/include/seqan/align_parallel/wavefront_task_util.h\n"
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"file": " /opt/local/include/seqan/align_profile.h\n"
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{
"file": " /opt/local/include/seqan/align_profile/add_to_profile.h\n"
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{
"file": " /opt/local/include/seqan/align_profile/score_profile_seq.h\n"
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{
"file": " /opt/local/include/seqan/align_split.h\n"
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{
"file": " /opt/local/include/seqan/align_split/align_split_interface.h\n"
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{
"file": " /opt/local/include/seqan/align_split/dp_scout_split.h\n"
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{
"file": " /opt/local/include/seqan/alignment_free.h\n"
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{
"file": " /opt/local/include/seqan/alignment_free/af_d2.h\n"
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{
"file": " /opt/local/include/seqan/alignment_free/af_d2star.h\n"
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{
"file": " /opt/local/include/seqan/alignment_free/af_d2z.h\n"
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{
"file": " /opt/local/include/seqan/alignment_free/af_n2.h\n"
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{
"file": " /opt/local/include/seqan/alignment_free/alignment_free_base.h\n"
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{
"file": " /opt/local/include/seqan/alignment_free/alignment_free_comparison.h\n"
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"file": " /opt/local/include/seqan/alignment_free/kmer_functions.h\n"
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"file": " /opt/local/include/seqan/arg_parse.h\n"
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"file": " /opt/local/include/seqan/arg_parse/arg_parse_argument.h\n"
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"file": " /opt/local/include/seqan/arg_parse/arg_parse_ctd_support.h\n"
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"file": " /opt/local/include/seqan/arg_parse/arg_parse_option.h\n"
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"file": " /opt/local/include/seqan/arg_parse/arg_parse_parse.h\n"
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"file": " /opt/local/include/seqan/arg_parse/arg_parse_type_support.h\n"
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"file": " /opt/local/include/seqan/arg_parse/arg_parse_version_check.h\n"
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"file": " /opt/local/include/seqan/arg_parse/argument_parser.h\n"
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"file": " /opt/local/include/seqan/arg_parse/tool_doc.h\n"
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"file": " /opt/local/include/seqan/arg_parse/xml_support.h\n"
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"file": " /opt/local/include/seqan/bam_io.h\n"
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"file": " /opt/local/include/seqan/bam_io/bam_alignment_record.h\n"
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"file": " /opt/local/include/seqan/bam_io/bam_alignment_record_util.h\n"
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"file": " /opt/local/include/seqan/bam_io/bam_file.h\n"
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"file": " /opt/local/include/seqan/bam_io/bam_header_record.h\n"
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"file": " /opt/local/include/seqan/bam_io/bam_index_bai.h\n"
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"file": " /opt/local/include/seqan/bam_io/bam_io_context.h\n"
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"file": " /opt/local/include/seqan/bam_io/bam_sam_conversion.h\n"
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"file": " /opt/local/include/seqan/bam_io/bam_scanner_cache.h\n"
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"file": " /opt/local/include/seqan/bam_io/bam_tags_dict.h\n"
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"file": " /opt/local/include/seqan/bam_io/cigar.h\n"
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"file": " /opt/local/include/seqan/bam_io/read_bam.h\n"
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"file": " /opt/local/include/seqan/bam_io/read_sam.h\n"
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"file": " /opt/local/include/seqan/bam_io/write_bam.h\n"
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"file": " /opt/local/include/seqan/bam_io/write_sam.h\n"
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"file": " /opt/local/include/seqan/index/find_index_qgram.h\n"
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
"file": " /opt/local/share/doc/seqan/html/tag_EditDistance.html\n"
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{
"file": " /opt/local/share/doc/seqan/html/tag_GeneticCode.html\n"
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{
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{
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{
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{
"file": " /opt/local/share/doc/seqan/html/tag_Move.html\n"
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{
"file": " /opt/local/share/doc/seqan/html/tag_Murphy10.html\n"
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{
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{
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{
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{
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{
"file": " /opt/local/share/doc/seqan/html/variable_LibraryStoreElementstd.html\n"
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]
}
]
}